- Publications
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PMN publications
Please check back for PMN publications in the futureAraCyc publications
Rhee SY, Zhang P, and Foerster H, and Tissier C (2005) AraCyc: Overview of an Arabidopsis Metabolism Database and Its Applications for Plant Research. In Biotechnology in Agriculture and Forestry: Plant Metabolomics. K. Saito, R. Dixon and L. Willmitzer ed., Springer. volume 57. pp. 141-153. [HTML]
Zhang, P, Foerster, H, Tissier, C, Mueller, L, Paley, S, Karp, P, Rhee, SY (2005) MetaCyc and AraCyc. Metabolic Pathway Databases for Plant Research. Plant Physiology 138: 27-37.
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Mueller, LA., Zhang, P., Rhee SY (2003) AraCyc. A Biochemical Pathway Database for Arabidopsis. Plant Physiology. 132(2):453-60.
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Biocyc publications
MetaCyc publications
MedicCyc publications
Urbanczyk-Wochniak, E. and Sumner, L.W. (2007) MedicCyc: a biochemical pathway database for Medicago truncatula. Bioinformatics. 23(11):1418-1423
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Sol Genomics Network publications
Mueller LA, Solow TH, Taylor N, Skwarecki B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD. (2005) The SOL Genomics Network. A Comparative Resource for Solanaceae Biology and Beyond. Plant Physiology. 138(3):1310-7.
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Bioinformatics publications
Rhee SY, Dickerson, J, and Xu, D (2006) Bioinformatics and its Applications in Plant Biology. Annual Review of Plant Biology. 57: 335-360
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Rhee SY and Crosby W. (2005) Biological Databases for Plant Research. Plant Physiology. 138(1):1-3.
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Rhee SY. (2005) Bioinformatics: Current Limitations and Insights for the Future. Plant Physiology. 138(2):569-70.
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Reiser, L; Mueller, LA; and Rhee, SY (2002) Surviving in a sea of data: a survey of plant genome data resources and issues in building data management systems. Plant Molecular Biology. 48(1):59-74.
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Rhee, SY. Bioinformatic resources, challenges, and opportunities using Arabidopsis thaliana as a model organism in post-genomic era. (2000) Plant Physiology.124(4):1460-4.
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