- Model Organism Databases
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This provides a list of plant-specific model organism databases. Sites are listed in alphabetical order based on the name of the site. Please use the "Find" feature on your web browser to locate a specific plant database on this page using the scientific or common name.
For links to other species, please see this list of non-plant model organism databases or visit one of the sites that provides links to numerous different organism-specific databases.
Plant Model Organism Databases
BeanGenes - beans
Phaseolus and Vigna species
Chlamydomonas Center - green alga
Chlamydomonas
ForesttreeDB - white spruce, loblolly pine, and poplar
Picea glauca, Pinus taeda, and Populus species
GrainGenes - grasses
Triticum and Avena species
Gramene - cultivated rice, wild rice, maize, wheat, barley, sorghum, pearl millet, foxtail, and oats
Oryza sativa and Zizania species, Zea mays, Triticum aestivum, Hordeum vulgare, Sorghum bicolor, Pennisetum glaucum, Alopecurus pratensis, Avena species, and other grasses
Legume Base - Lotus japonicus and soybean
Lotus japonicus and Glycine max
Maize GDB - corn/maize
Zea mays
Maize Mapping Project - corn/maize
Zea mays
Medicago.org - barrel medic
Medicago truncatula
MIPS (Munich Information Center for Protein Sequence) - mouse ear cress, corn/maize, rice, barrel medic, Lotus japonicus, tomato
Arabidopsis thaliana, Zea mays, Oryza sativa, Medicago truncatula, Lotus japonicus, Solanum lycopersicum
Oryzabase - rice species
Oryza species
Poplar Genome - poplar
Populus trichocarpa
Rice Genome Research Project - cultivated rice
Oryza sativa
SGN (Sol Genomics Network) - tomato, potato, eggplant, pepper, petunia, coffee, petunia
Solanaceae and Rubiaceae species
SoyBase - soybean
Glycine max
TAIR (The Arabidopsis Information Resource) - mouse ear cress
Arabidopsis thaliana
TIGR Plant Genomics Database - multiple species
UrMeLDB - barrel medic
Medicago truncatula
Wheat Genetic and Genomic Resources Center - wheat and related grasses
Triticum, Aegilops, and Haynaldia villosa species
Non-Plant Model Organism Databases
Additional Organism-specific Database Collections
JGI Eukaryotic Genomics Projects - over 40 species
JGI Microbial Genomics Projects - over 200 species
Multiple Species Genome Browser - numerous non-plant species
NCBI Entrez Genome Project Database - hundreds of species
TIGR Genome Projects - multiple species
Worldwide Genetic Resources - over 750 species
Please send us suggestions for any additional sites that should be listed on this page.
