| PlantCyc 5.0 | AraCyc 8.0 | PoplarCyc 3.0 | |
|---|---|---|---|
| Pathways (total) | 810 | 446 | 343 |
| Superpathways* | 73 | 53 | 34 |
| Base pathways* | 737 | 393 | 309 |
| -- Experimentally-supported (EV-EXP) | 682 | 335 | 36 |
| -- Hypothetical (EV-HYPO) | 8 | 1 | 2 |
| -- Predicted (EV-COMP) | 28 | 38 | 205 |
| -- with no enzymes | 92 | 17 | 44 |
| Enzymes** | 11217 | 5520 | 3422 |
| -- in reactions | 10582 | 3203 | 2982 |
| ---- in reactions (EV-EXP) | 2325 | 1187 | 8 |
| ---- in reactions in pathways | 10265 | 2071 | 1842 |
| ------ in reactions (EV-EXP) in pathways | 2235 | 973 | 7 |
| Reactions | 3167 | 2689 | 1906 |
| -- with enzymes | 2244 | 1831 | 1138 |
| ---- with enzymes (EV-EXP) | 1931 | 1253 | 8 |
| -- in pathways | 2902 | 1616 | 1297 |
| ---- in pathways with enzymes | 2163 | 1223 | 660 |
| ------ in pathways with enzymes (EV-EXP) | 1872 | 965 | 8 |
| Compounds | 3146 | 2825 | 1406 |
| Organisms (species and hybrids) | 366 | 1 | 1*** |
| Citations | 5734 | 3346 | 1371 |
| PlantCyc 4.0 | AraCyc 7.0 | PoplarCyc 2.0 | |
|---|---|---|---|
| Pathways (total) | 762 | 423 | 323 |
| Superpathways* | 77 | 54 | 35 |
| Base pathways* | 685 | 369 | 288 |
| -- Experimentally-supported (EV-EXP) | 634 | 312 | 33 |
| -- Hypothetical (EV-HYPO) | 8 | 1 | 2 |
| -- Predicted (EV-COMP) | 29 | 40 | 203 |
| -- with no enzymes | 91 | 20 | 34 |
| Enzymes** | 11058 | 5506 | 3420 |
| -- in reactions | 10411 | 2926 | 2643 |
| ---- in reactions (EV-EXP) | 2144 | 1062 | 4 |
| ---- in reactions in pathways | 10206 | 2011 | 1818 |
| ------ in reactions (EV-EXP) in pathways | 2076 | 891 | 3 |
| Reactions | 2929 | 2418 | 1707 |
| -- with enzymes | 2088 | 1700 | 1032 |
| ---- with enzymes (EV-EXP) | 1757 | 1107 | 4 |
| -- in pathways | 2754 | 1560 | 1218 |
| ---- in pathways with enzymes | 2020 | 1136 | 653 |
| ------ in pathways with enzymes (EV-EXP) | 1721 | 876 | 3 |
| Compounds | 2966 | 2719 | 1397 |
| Organisms (species and hybrids) | 343 | 1 | 1*** |
| Citations | 5204 | 2907 | 1092 |
| PlantCyc 3.0 | AraCyc 6.0 | PoplarCyc 1.0 | |
|---|---|---|---|
| Pathways (total) | 714 | 408 | 321 |
| Superpathways* | 71 | 48 | 36 |
| Base pathways* | 643 | 360 | 285 |
| -- Experimentally-supported (EV-EXP) | 585 | 299 | 25 |
| -- Hypothetical (EV-HYPO) | 7 | 0 | 0 |
| -- Predicted (EV-COMP) | 31 | 41 | 215 |
| -- with no enzymes | 91 | 20 | 31 |
| Enzymes** | 10964 | 5501 | 3434 |
| -- in reactions | 10324 | 2897 | 2671 |
| ---- in reactions (EV-EXP) | 2020 | 1040 | 2 |
| ---- in reactions in pathways | 10156 | 2007 | 1807 |
| ------ in reactions (EV-EXP) in pathways | 1974 | 858 | 1 |
| Reactions | 2709 | 2323 | 1668 |
| -- with enzymes | 1942 | 1669 | 1036 |
| ---- with enzymes (EV-EXP) | 1621 | 1061 | 2 |
| -- in pathways | 2619 | 1510 | 1212 |
| ---- in pathways with enzymes | 1928 | 1093 | 662 |
| ------ in pathways with enzymes (EV-EXP) | 1614 | 829 | 2 |
| Compounds | 2679 | 2630 | 1363 |
| Organisms (species and hybrids) | 329 | 1 | 1*** |
| Citations | 4803 | 2691 | 903 |
At the time of the PlantCyc 2.0 release (March 2009), the following data are present in the database:
Please see our archives for database content statistics for previous PlantCyc releases
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -|
Total number of pathways (excluding superpathways): |
332 |
| ... with experimental evidence (EV-EXP or EV-AS): | 290 |
| ... with no associated genes: | 21 |
| Total number of reactions: | 1928 |
| ... associated with genes: | 1270 |
| ... number of reactions associated with genes having experimental evidence: | 925 |
| ... in pathways: | 1388 |
| ... in pathways, associated with genes: | 932 |
| ... in pathways, associated with genes having experimental evidence: | 723 |
| Total number of genes: | 5821 |
| ... in pathways: | 1970 |
| ... with experimental evidence, in pathways: | 773 |
... in reactions: |
2787 |
| ... with experimental evidence, in reactions: | 952 |
Total number of proteins: |
5869 |
|
Total number of protein complexes: |
166 |
Total number of compounds: |
2312 |
Total number of citations: |
2543 |
At the time of the PlantCyc 1.0 release (June 2008), the following data are present in the database:
Please see our archives for database content statistics for previous PlantCyc releases
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -Top|
Total number of pathways (excluding superpathways): |
288 |
| ... with experimental evidence (EV-EXP or EV-AS): | 258 |
| ... with no associated genes: | 12 |
| Total number of reactions: | 1723 |
| ... associated with genes: | 1220 |
| ... number of reactions associated with genes having experimental evidence: | 879 |
| ... in pathways: | 1279 |
| ... in pathways, associated with genes: | 878 |
| ... in pathways, associated with genes having experimental evidence: | 680 |
| Total number of genes: | 6158 |
| ... in pathways: | 1914 |
| ... with experimental evidence, in pathways: | 771 |
... in reactions: |
2733 |
| ... with experimental evidence, in reactions: | 922 |
Total number of proteins: |
6214 |
|
Total number of protein complexes: |
174 |
Total number of compounds: |
1956 |
Total number of citations: |
2279 |
|
Total number of pathways (excluding superpathways): |
283 |
| ... with experimental evidence: | 256 |
| Total number of reactions: | 1701 |
| ... associated with genes: | 1194 |
| ... associated with genes + experimental evidence: | 839 |
| ... in pathways: | 1273 |
| ... in pathways, associated with genes: | 859 |
| ... in pathways, associated with genes + experimental evidence: | 662 |
| Total number of genes: | 5964 |
| ... in pathways: | 1901 |
| ... with experimental evidence, in pathways: | 733 |
... in reactions: |
2694 |
| ... with experimental evidence, in reactions: | 823 |
Total number of proteins: |
6021 |
|
Total number of protein complexes: |
172 |
Total number of compounds: |
1908 |
Total number of citations: |
2192 |
|
Total number of pathways (excluding superpathways): |
285 |
| ... with experimental evidence: | 230 |
| Total number of reactions: | 1701 |
| ... associated with genes: | 1136 |
| ... in pathways: | 1277 |
| ... in pathways, associated with genes: | 807 |
| ... associated with genes + experimental evidence: | 773 |
| ... in pathways, associated with genes + experimental evidence: | 599 |
| Total number of genes: | 5956 |
| ... in pathways: | 1879 |
| ... with experimental evidence, in pathways: | 712 |
... in reactions: |
2675 |
| ... with experimental evidence, in reactions: | 815 |
Total number of proteins: |
6011 |
|
Total number of protein complexes: |
163 |
Total number of compounds: |
1902 |
Notes:
* A base pathway is composed entirely of reactions. It does not contain any other base pathways in their entirety. A superpathway is composed of a base pathway plus at least one additional reaction or base pathway.
** The term "enzyme" refers to both monomers and complexes found in the databases.
*** The vast majority of the enzymes present in the database are from Populus trichocarpa but experimentally supported enzymes and pathways from other species or hybrids in the Populus genus can be included in PoplarCyc.
To learn more about the new data and tools available in this release, please visit our:
For information concerning previous releases, please visit our: