- PMN Database Content Statistics
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Current PMN (7.0) Release - August 2012
PMN Metabolic Pathway Database Overview Pathways (total)* Enzymes ** Reactions Compounds Citations PlantCyc 7.0 978 34663 3617 3455 7634 AraCyc 10.0 540 7127 3418 3323 4225 CassavaCyc 2.0 351 7178 2137 1538 1905 ChlamyCyc 2.0 283 2157 1688 1130 2036 CornCyc 2.0 373 10527 2198 1752 2344 GrapeCyc 2.0 359 5341 2143 1571 2037 MossCyc 1.0 335 5664 2018 1409 1869 PapayaCyc 1.0 370 3898 2165 1557 2036 PoplarCyc 5.0 381 8691 2256 1613 2099 SelaginellaCyc 1.0 329 3958 1986 1403 1838 SoyCyc 3.0 441 13055 2566 2007 2762 Detailed stats (.xls) for: PlantCyc and AraCyc
Notes:
* The "total" number of pathways includes both base pathways and superpathways. A base pathway is composed entirely of reactions. It does not contain any other base pathways in their entirety. A superpathway is composed of a base pathway plus at least one additional reaction or base pathway.
** The term "enzyme" refers to both monomers and complexes found in the databases. It also includes proteins that have not specifically been linked to a reaction to date but are likely to act as enzymes or subunits of enzymes.
*** The number of pathways reported for early versions of AraCyc and PlantCyc only refers to base pathways and does not include superpathways.
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Database statistics for PlantCyc and species-specific databases
PlantCyc content statistics Pathways (total)* Enzymes ** Reactions Compounds Citations Release date PlantCyc 7.0 978 34663 3617 3455 7634 August 2012 PlantCyc 6.0 898 27652 3421 3334 6939 March 2012 PlantCyc 5.0 810 11217 3167 3146 5734 April 2011 PlantCyc 4.0 762 11058 2929 2966 5204 June 2010 PlantCyc 3.0 714 10964 2709 2679 4803 Oct 2009 PlantCyc 2.0 581*** 8558 2501 2464 4971 March 2009 PlantCyc 1.0 508*** 3389 2277 2314 4208 June 2008
NA = not available
AraCyc content statistics Pathways
(total)*Enzymes ** Reactions Compounds Citations Release date AraCyc 10.0 540 7127 3418 3323 4225 August 2012 AraCyc 9.0 502 7100 3320 3320 3210 March 2012 AraCyc 8.0 446 5520 2689 2825 3346 April 2011 AraCyc 7.0 423 5506 2418 2719 2907 June 2010 AraCyc 6.0 408 5501 2323 2630 2691 October 2009 AraCyc 5.0 332*** 5869 1928 2312 2543 March 2009 AraCyc 4.5 288*** 6214 1723 1956 2279 June 2008 AraCyc 4.1 283*** 6021 1701 1908 2192 November 2007 AraCyc 4.0 285*** 6011 1701 1902 NA July 2007
NA = not available
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CassavaCyc content statistics Pathways (total)* Enzymes ** Reactions Compounds Citations Release date CassavaCyc 2.0 351 7178 2137 1538 1905 August 2012 CassavaCyc 1.0 323 7178 2103 1815 1815 March 2012
ChlamyCyc content statistics Pathways (total)* Enzymes ** Reactions Compounds Citations Release date ChlamyCyc 2.0 283 2157 1688 1130 2036 August 2012 ChlamyCyc 1.0 % 299 14732 1648 1255 1263 2009
CornCyc content statistics Pathways (total)* Enzymes ** Reactions Compounds Citations Release date CornCyc 2.0 373 10527 2198 1752 2344 August 2012 CornCyc 1.0 341 10519 2156 1731 2240 March 2012
GrapeCyc content statistics Pathways (total)* Enzymes ** Reactions Compounds Citations Release date GrapeCyc 2.0 359 5341 2143 1571 2037 August 2012 GrapeCyc 1.0 330 5338 2101 1540 1933 March 2012
MossCyc content statistics Pathways (total)* Enzymes ** Reactions Compounds Citations Release date MossCyc 1.0 335 5664 2018 1409 1869 August 2012
PapayaCyc content statistics Pathways (total)* Enzymes ** Reactions Compounds Citations Release date PapayaCyc 1.0 370 3898 2165 1557 2036 August 2012
PoplarCyc content statistics Pathways (total)* Enzymes ** Reactions Compounds Citations Release date PoplarCyc 5.0 381 8691 2256 1613 2099 August 2012 PoplarCyc 4.0 354 8691 2220 1596 2013 March 2012 PoplarCyc 3.0 343 3422 1906 1406 1371 April 2011 PoplarCyc 2.0 323 3420 1707 1397 1092 June 2010 PoplarCyc 1.0 321 3434 1668 1363 903 October 2009
SelaginellaCyc content statistics Pathways (total)* Enzymes ** Reactions Compounds Citations Release date SelaginellaCyc 1.0 329 3958 1986 1403 1838 August 2012
SoyCyc content statistics Pathways (total)* Enzymes ** Reactions Compounds Citations Release date SoyCyc 3.0 441 13055 2566 2007 2762 August 2012 SoyCyc 2.0 412 13094 2528 1987 2673 March 2012 SoyCyc 1.0 # 369 4225 1762 1268 NA March 2010
NA = not available
% = ChlamyCyc 1.0 was not officially released at the PMN site because it was generated at the Max Planck Institute and publized at the GoFORSYS website.
# = SoyCyc 1.0 was not officially released at the PMN site because it did not undergo manual validation but was displayed at SoyBase
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