The PlantCyc 1.0 release was generated with all AraCyc (version 4.5) pathways and additional plant pathways from MetaCyc (version 12.0). We have also manually curated a set of new pathways:

New PMN-Curated Pathways in PlantCyc 1.0

• afrormosin conjugates interconversion
• alizarin biosynthesis
• beta-carboline biosynthesis
• cocaine biosynthesis
• 1,4-dihydroxy-2-naphthoate biosynthesis
• ephedrine biosynthesis
• gallate biosynthesis
• heliannuol and heliespirone biosynthesis
• heliocides biosynthesis
• hypoglycin biosynthesis
• IAA conjugate biosynthesis III
• IAA degradation V
• IAA degradation VI
• IAA degradation VII
• juglone biosynthesis
• lawsone biosynthesis
• linear furonocoumarin biosynthesis II
• magnoflorine biosynthesis
• maysin biosynthesis
• robustaquinone biosynthesis
• rubber biosynthesis
• simplecoumarins biosynthesis
• trichloroethylene degradation
• usnate biosynthesis
• xylan biosynthesis

In addition, we imported these pathways from other plant pathway databases:

RiceCyc

• momilactone biosynthesis
• oryzalexin A-F biosynthesis
• oryzalexin S biosynthesis
• phytocassane biosynthesis

MedicCyc

• alfalone and afrormosin biosynthesis
• irilone biosynthesis
• triterpene saponin biosynthesis

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