Ntabacum_Tn90Cyc 3.0.1

Parent

Overview

Released:

PMN 15.0 (January 2021)

Taxonomic Range:

Nicotiana tabacum TN90

Protein Sequence Source:

SGN: Nitab-v4.5_proteins_Edwards2017.fa

Enzyme Functional Annotation Method:

Enzyme Evidence:

Almost exclusively large-scale computational predictions of enzyme function not subject to curator review
Small number of manually curated enzymes

Pathway Prediction Program:

Pathway Tools 24.0

SAVI pathway validation lists:

MCP 2.0
AIPP 6.0
CAPP 6.0
CVP 6.0
NPP 9.0
UPP 9.0

Pathway Evidence:

Substantial manual curation of pathways
Some computational prediction of pathways followed by curator review
Additional pathways imported from MetaCyc based on curator inference

Link to PGDB:

Ntabacum_Tn90Cyc

Content Statistics

Number of Pathways:

547

Number of Reactions:

3403

Number of Compounds:

2603

Number of Enzymes:

14176

Number of Citations:

4351