Release Notes

PMN Release 14.0

Released: 
January 2020
Release Information: 

The data content of all 126 databases are described on our Content Statistics page while the data sources and methods for each database's contruction are listed on the Databases Overview page

Past releases are described in the Release Notes Archives and Databases Overview Archives

Parent

Overview
Update Of: 
PMN Release 13.0
Overall Highlights: 

We are pleased to announce the PMN 14 release! In this release we introduce 25 new organism-specific metabolic pathway databases, which brings the total number of organism pathway databases to 125.  New species include ten crops, six wild crop-relatives, three ornamentals, two oak trees, a model plant, our first gymnosperm, our first parasitic plant, and a green alga.

Arabidopsis thaliana Landsberg, Cajanus cajan (pigeon pea),  Camellia sinensis (tea), Chlorella variabilis (a green alga), Citrullus lanatus (watermelon), Cucumis melo (Cantaloupe, Honeydew, and related melons),  Cuscuta campestris (a parasitic plant), Elaeis guineensis (African oil palm), Ginkgo biloba, Hevea brasiliensis (rubber tree), Lactuca sativa (lettuce), Musa balbisiana (a wild banana), Nelumbo nuficera (sacred lotus), Oryza barthii (African wild rice), Oryza longistaminanta (another wild rice), Oryza meridionalis (Australian wild rice), Oryza nivara (still another wild rice), Phoenix dactylifera (date palm), Phyllostachys edulis (Moso bamboo), Prunis avium (cherry), Pyrus communis (European pear), Quercus lobata (valley oak), Quercus suber (cork oak), Saccharum spontanaeum (wild sugar cane), and Tarenaya hassleriana (Spider flower).

The full list of 125 species and details of the database constructions can be found here.

We have also updated the pan-plant pathway database PlantCyc (version 14.0). The PlantCyc database includes only literature-curated enzymes and pathways, including from species that do not have a full genome database in PMN.  

Please note that the following 8 databases were constructed or updated from genome releases which are under prepublication data usage restrictions:

AhalleriCyc (Arabidopsis halleri), CashewCyc (Anacardium occidentale), CommonbeanCyc (Phaseolus vulgaris), MsinensisCyc (Miscanthus sinensis), PhalliiCyc (Panicum hallii), SfallaxCyc (Sphagnum fallax), SviridisCyc (Setaria viridis), SwitchgrassCyc (Panicum virgatum). Please see detailed data policy at the corresponding species pages from Phytozome (v12.1).

PMN Release 14.0
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 14.0 1163 3769 5234 4807 14783
AcoeruleaCyc 2.0 493 9985 3120 2328 3924
AhalleriCyc 3.0 470 6163 3062 2231 3600
AhypochondriacusCyc 3.0 485 5496 2984 2217 3888
AlyrataCyc 3.0 484 7122 3057 2232 3706
AmborellaCyc 3.0 472 5324 3074 2292 3816
AraCyc 17.0 650 8556 3793 3030 7221
AsparagusCyc 2.0 462 5914 2974 2247 3757
BananaCyc 3.0 480 9952 3027 2268 3856
BarleyCyc 7.0 519 57690 3489 2642 4023
Boleracea_CapitataCyc 3.0 467 7598 2963 2178 3648
Boleracea_OleraceaCyc 3.0 481 12263 3136 2295 3689
BrachypodiumCyc 7.0 479 10065 3051 2278 3823
Brapa_FpscCyc 3.0 481 9765 3047 2220 3710
BreadwheatCyc 3.0 496 30682 3271 2474 3975
BstrictaCyc 3.0 474 6506 3016 2205 3631
CacuminataCyc 2.0 489 7360 3146 2355 3881
CannuumCyc 2.0 512 8164 3147 2420 4136
Carietinum_Icc4958Cyc 3.0 493 6633 3236 2365 3912
CarnationCyc 2.0 490 7514 3106 2341 3958
CarrotCyc 3.0 486 7185 3033 2253 3883
CashewCyc 2.0 496 18887 3150 2357 3957
CassavaCyc 9.0 492 8603 3111 2322 3864
CastorbeanCyc 3.0 521 6895 3756 2840 4047
CcapsularisCyc 2.0 482 5217 2966 2177 3840
CgiganteaCyc 2.0 483 4760 2985 2230 3852
CgrandifloraCyc 3.0 471 6121 2983 2175 3607
ChinesecabbageCyc 7.0 478 9402 3027 2188 3708
ChlamyCyc 9.0 380 3367 2608 1879 4095
ClementineCyc 3.0 488 8423 3042 2273 3892
CocoaCyc 3.0 498 8866 3164 2381 4012
CommonbeanCyc 3.0 501 8708 3089 2284 3949
CornCyc 10.0 556 27682 3377 2592 5245
CroseusCyc 3.0 500 5483 3069 2301 4004
CrubellaCyc 3.0 472 6609 3015 2205 3628
Csativa_PkCyc 3.0 493 5872 3142 2328 3908
CsubellipsoideaCyc 3.0 312 2266 2256 1648 2889
CucumberCyc 3.0 481 7317 2917 2155 3875
CzofingiensisCyc 2.0 332 2971 2567 1927 2900
DrotundataCyc 2.0 450 4721 2816 2125 3616
EggplantCyc 2.0 508 6949 3215 2375 4070
EgrandisCyc 3.0 506 11549 3136 2357 3964
EsalsugineumCyc 3.0 477 6877 3014 2196 3642
FlaxCyc 3.0 512 10589 3230 2433 4037
Fvesca_VescaCyc 3.0 494 10213 3055 2257 3926
GraimondiiCyc 3.0 490 18197 3141 2351 3862
GrapeCyc 9.0 500 7448 3149 2391 4035
HopCyc 2.0 497 12073 3223 2429 3963
KfedtschenkoiCyc 2.0 482 10385 3061 2294 3814
KlaxifloraCyc 3.0 472 16279 3023 2260 3790
LjaponicusCyc 3.0 506 9975 3234 2426 4022
LperrieriCyc 3.0 488 8210 3018 2260 3883
McommodaCyc 3.0 310 2044 2171 1564 2778
MdomesticaCyc 3.0 508 10558 3179 2393 4049
MguttatusCyc 3.0 487 7771 3074 2340 3839
MossCyc 8.0 415 17888 2868 2046 3330
MpolymorphaCyc 2.0 422 4841 2711 1992 3392
MpusillaCyc 3.0 301 1971 2085 1539 2755
MsinensisCyc 2.0 494 17547 3206 2394 3865
MtruncatulaCyc 3.0 524 10909 3269 2460 4081
Ntabacum_Tn90Cyc 3.0 547 14176 3403 2603 4351
ObrachyanthaCyc 3.0 489 6227 3034 2282 3908
Oeuropaea_SylvestrisCyc 2.0 485 8643 3072 2307 3869
OglaberrimaCyc 3.0 494 6512 3042 2289 3902
OilseedrapeCyc 3.0 496 21067 3240 2403 3994
OlucimarinusCyc 3.0 294 1701 1953 1425 2727
OpunctataCyc 3.0 484 8371 3022 2273 3888
OrufipogonCyc 3.0 496 8833 3118 2332 3942
OryzaCyc 7.0 606 14682 3846 2987 5193
OthomaeumCyc 3.0 460 5389 2868 2135 3756
PapayaCyc 8.0 485 5201 3114 2314 3806
PaxillarisCyc 2.0 505 8094 3217 2425 3946
PhalliiCyc 2.0 481 8704 3022 2241 3832
PineappleCyc 3.0 464 5698 2894 2149 3776
PoplarCyc 12.0 500 13454 3190 2380 3930
PotatoCyc 6.0 521 11429 3272 2497 4209
PpersicaCyc 3.0 499 10923 3053 2269 3946
QuinoaCyc 2.0 496 10629 3141 2359 3933
RchinensisCyc 2.0 509 8938 3200 2413 4027
RedcloverCyc 3.0 507 8860 3209 2406 3958
RedsageCyc 3.0 495 7361 3178 2398 3872
RmultifloraCyc 2.0 512 13358 3279 2483 4011
SelaginellaCyc 8.0 422 6216 2799 2087 3417
SetariaCyc 7.0 489 9156 3052 2270 3857
SfallaxCyc 2.0 403 6745 2655 1955 3262
SoleraceaCyc 3.0 490 5237 3016 2229 4013
SorghumbicolorCyc 7.0 492 9924 3063 2298 3868
SoyCyc 10.0 589 19055 3472 2695 5295
SpennelliiCyc 2.0 508 7450 3176 2357 3994
SpirodelaCyc 5.0 455 4413 2748 2018 3634
SugarbeetCyc 3.0 496 5718 3103 2309 3937
SunflowerCyc 2.0 497 11386 3134 2330 3879
SviridisCyc 3.0 485 10539 3071 2275 3827
SweetorangeCyc 3.0 493 11605 3144 2345 3943
SwitchgrassCyc 7.0 506 25703 3240 2425 3967
TomatoCyc 5.0 540 7991 3319 2516 4411
TparvulaCyc 3.0 475 5908 3050 2229 3655
VcarteriCyc 3.0 321 2804 2272 1635 2769
WheataCyc 5.0 484 7186 3121 2328 3864
WheatdCyc 5.0 520 57062 3611 2704 4034
ZmarinaCyc 3.0 436 4638 2672 1967 3468
CcampestrisCyc 1.0 470 9592 2901 2156 3653
CorkoakCyc 1.0 522 14428 3978 3001 4077
CvariabilisCyc 1.0 334 17511 2441 1757 2918
DatepalmCyc 1.0 466 6043 2891 2164 3805
EuropeanpearCyc 1.0 497 10116 3132 2322 3949
GinkgoCyc 1.0 453 7884 2958 2228 3654
LerCyc 1.0 524 7073 3253 2996 8585
LettuceCyc 1.0 502 14374 3161 2356 3850
MbalbisianaCyc 1.0 475 7049 2877 2139 3812
MosobambooCyc 1.0 484 12574 3108 2340 3845
MuskmelonCyc 1.0 483 5571 2979 2184 3854
ObarthiiCyc 1.0 493 7994 3097 2316 3934
OilpalmCyc 1.0 459 9243 2906 2181 3769
OlongistaminataCyc 1.0 498 7031 3089 2329 3938
OmeridionalisCyc 1.0 475 8608 2966 2277 3903
OnivaraCyc 1.0 495 9055 3076 2295 3928
PigeonpeaCyc 1.0 498 7345 3157 2346 3911
RubbertreeCyc 1.0 516 9809 3334 2528 4036
SacredlotusCyc 1.0 471 8966 2961 2219 3756
SpiderflowerCyc 1.0 472 9139 3017 2212 3623
SweetcherryCyc 1.0 501 6757 3130 2342 3966
TeaCyc 1.0 484 8505 3069 2307 3884
ValleyoakCyc 1.0 516 13100 3341 2514 4051
WatermelonCyc 1.0 474 4916 2887 2150 3829
WildsugarcaneCyc 1.0 500 19681 3216 2424 3934

PMN Release 13.0
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 13.0 1123 4123 4970 4544 10518
AcoeruleaCyc 1.0 476 5871 3085 2289 4119
AhalleriCyc 2.0 479 4771 3204 2323 3983
AhypochondriacusCyc 2.0 474 4730 2990 2251 4157
AlyrataCyc 2.0 488 5543 3182 2335 4108
AmborellaCyc 2.0 471 4621 3085 2333 4148
AraCyc 16.0 627 5451 3585 2820 6335
AsparagusCyc 1.0 464 5051 2944 2244 4096
BananaCyc 2.0 465 6636 2956 2239 4128
BarleyCyc 6.0 496 7352 3040 2307 4235
Boleracea_capitataCyc 2.0 475 6529 3080 2276 4026
Boleracea_oleraceaCyc 2.0 486 10592 3282 2406 4077
BrachypodiumCyc 6.0 483 5377 3031 2282 4141
Brapa_fpscCyc 2.0 485 7701 3175 2350 4095
BreadwheatCyc 2.0 531 22576 3464 2743 4645
BstrictaCyc 2.0 478 5117 3133 2295 4023
CacuminataCyc 1.0 498 6305 3164 2388 4283
CannuumCyc 1.0 508 7197 3140 2433 4278
Carietinum_icc4958Cyc 2.0 508 5688 3312 2434 4314
CarnationCyc 1.0 480 6524 3028 2311 4253
CarrotCyc 2.0 477 6308 3016 2274 4121
CashewCyc 1.0 481 8085 3110 2336 4167
CassavaCyc 8.0 495 6352 3133 2347 4257
CastorbeanCyc 2.0 522 6183 3712 2857 4509
CcapsularisCyc 1.0 473 4550 2982 2194 4111
CgiganteaCyc 1.0 471 4068 3002 2256 4100
CgrandifloraCyc 2.0 472 4786 3070 2239 3966
ChineseCabbageCyc 6.0 481 7920 3167 2314 4062
ChlamyCyc 8.0 387 2773 2495 1770 3932
ClementineCyc 2.0 493 5224 3107 2329 4292
CocoaCyc 2.0 493 5281 3151 2381 4250
CommonbeanCyc 2.0 498 5696 3090 2353 4248
CornCyc 9.0 565 7399 3305 2526 4966
CroseusCyc 2.0 505 4684 3123 2446 4377
CrubellaCyc 2.0 471 5069 3096 2263 3958
Csativa_pkCyc 2.0 486 5087 3107 2335 4175
CsubellipsoideaCyc 2.0 300 2079 2200 1594 3170
CucumberCyc 2.0 483 4417 2959 2280 4290
CzofingiensisCyc 1.0 303 2729 2426 1804 3117
DrotundataCyc 1.0 436 4177 2787 2110 3907
EggplantCyc 1.0 503 5991 3183 2376 4240
EgrandisCyc 2.0 498 7972 3141 2370 4271
EsalsugineumCyc 2.0 476 4997 3105 2267 3990
FlaxCyc 2.0 509 9179 3288 2525 4320
Fvesca_vescaCyc 2.0 483 5162 3027 2280 4163
GraimondiiCyc 2.0 493 7430 3148 2354 4244
GrapeCyc 8.0 508 7298 3202 2389 4384
HopCyc 1.0 456 6636 3124 2388 4120
KfedtschenkoiCyc 1.0 470 6160 3094 2348 4070
KlaxifloraCyc 2.0 443 10413 2992 2258 3998
LjaponicusCyc 2.0 503 7026 3208 2457 4275
LperrieriCyc 2.0 469 5061 2908 2203 4034
McommodaCyc 2.0 294 1842 1958 1401 3027
MdomesticaCyc 2.0 500 13182 3263 2545 4378
MguttatusCyc 2.0 478 5562 3085 2339 4072
MossCyc 7.0 385 5266 2752 1983 3478
MpolymorphaCyc 1.0 370 3451 2624 1919 3490
MpusillaCyc 2.0 295 1788 1923 1410 3088
MsinensisCyc 1.0 496 11365 3158 2375 4199
MtruncatulaCyc 2.0 520 7922 3290 2491 4360
Ntabacum_tn90Cyc 2.0 506 9155 3146 2533 4658
ObrachyanthaCyc 2.0 477 5338 2978 2265 4101
Oeuropaea_sylvestrisCyc 1.0 484 7353 3129 2377 4149
OglaberrimaCyc 2.0 473 5570 2969 2253 4087
OilseedrapeCyc 2.0 502 17835 3348 2526 4364
OlucimarinusCyc 2.0 274 1567 1799 1306 2952
OpunctataCyc 2.0 473 5280 2959 2249 4091
OrufipogonCyc 2.0 474 5548 3025 2294 4113
OryzaCyc 6.0 569 6325 3345 2614 4818
OthomaeumCyc 2.0 419 4637 2727 2063 3901
PapayaCyc 7.0 471 4378 3065 2290 4035
PaxillarisCyc 1.0 509 7049 3220 2413 4228
PhalliiCyc 1.0 473 6131 2981 2216 4082
PineappleCyc 2.0 461 4798 2895 2162 4094
PoplarCyc 11.0 519 8141 3242 2440 4376
PotatoCyc 5.0 510 6439 3192 2438 4372
PpersicaCyc 2.0 491 5437 3081 2327 4214
QuinoaCyc 1.0 492 9303 3139 2350 4212
RchinensisCyc 1.0 499 7811 3192 2413 4238
RedcloverCyc 2.0 504 7562 3246 2466 4226
RedsageCyc 2.0 479 5081 3039 2304 4082
RmultifloraCyc 1.0 505 11476 3344 2553 4288
SelaginellaCyc 7.0 404 4851 2728 2036 3617
SetariaCyc 6.0 479 6335 2983 2235 4092
SfallaxCyc 1.0 375 4917 2546 1880 3408
SoleraceaCyc 2.0 493 4178 3020 2375 4507
SorghumBicolorCyc 6.0 469 5988 2948 2222 4076
SoyCyc 9.0 618 10675 3539 2741 5103
SpennelliiCyc 1.0 504 5884 3165 2369 4201
SpirodelaCyc 4.0 436 3667 2691 2006 3857
SugarbeetCyc 2.0 489 4575 3097 2305 4226
SunflowerCyc 1.0 483 9998 3137 2348 4105
SviridisCyc 2.0 482 6423 3010 2242 4091
SweetorangeCyc 2.0 498 5244 3121 2364 4328
SwitchgrassCyc 6.0 502 13704 3265 2473 4267
TomatoCyc 4.0 524 7004 3305 2496 4431
TparvulaCyc 2.0 475 5004 3128 2296 4002
VcarteriCyc 2.0 297 2212 2122 1522 3067
WheatACyc 4.0 490 6352 3106 2384 4162
WheatDCyc 4.0 480 6590 3068 2322 4089
ZmarinaCyc 2.0 419 3849 2608 1900 3706

PMN Release 12.5
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 12.5 1200 136293 6498 5497 10836
AhalleriCyc 1.5 490 4741 3232 2371 3716
AhypochondriacusCyc 1.5 483 4608 2945 2242 3869
AlyrataCyc 1.5 502 5503 3211 2382 3834
AmborellaCyc 1.5 490 4585 3128 2396 3890
AraCyc 15.5 610 5447 3556 2967 6117
BananaCyc 1.5 480 6588 2988 2293 3874
BarleyCyc 5.5 487 4659 2942 2337 4024
Boleracea_capitataCyc 1.5 483 6477 3100 2321 3765
Boleracea_oleraceaCyc 1.5 500 10525 3320 2461 3815
BrachypodiumCyc 5.5 495 5338 3033 2320 3839
Brapa_fpscCyc 1.5 500 7646 3211 2409 3836
BreadwheatCyc 1.5 540 22445 3470 2774 4379
BstrictaCyc 1.5 493 5080 3171 2349 3750
Carietinum_icc4958Cyc 1.5 520 5662 3349 2485 4050
CarrotCyc 1.5 496 6283 3062 2343 3882
CassavaCyc 7.5 513 6296 3178 2422 4037
CastorbeanCyc 1.5 534 6141 3761 2917 4215
CgrandifloraCyc 1.5 489 4749 3121 2308 3697
ChineseCabbageCyc 5.5 497 7868 3206 2373 3786
ChlamyCyc 7.5 379 2772 2471 1799 3666
ClementineCyc 1.5 509 5191 3140 2377 4008
CocoaCyc 1.5 509 5181 3192 2442 3982
CommonbeanCyc 1.5 515 5582 3144 2412 3997
CornCyc 8.5 556 7372 3259 2614 4718
CroseusCyc 1.5 543 15565 3431 2696 4289
CrubellaCyc 1.5 486 5032 3141 2327 3687
Csativa_pkCyc 1.5 502 5047 3138 2382 3905
CsubellipsoideaCyc 1.5 304 2053 2195 1638 2872
CucumberCyc 1.5 495 4382 2999 2331 4045
EgrandisCyc 1.5 519 7909 3185 2431 4031
EsalsugineumCyc 1.5 490 4958 3141 2322 3711
FlaxCyc 1.5 526 9106 3322 2576 4062
Fvesca_vescaCyc 1.5 499 5125 3069 2341 3878
GraimondiiCyc 1.5 506 7371 3185 2410 3966
GrapeCyc 7.5 511 5790 3191 2463 4006
KlaxifloraCyc 1.5 463 10324 3027 2311 3743
LjaponicusCyc 1.5 512 6967 3236 2497 4010
LperrieriCyc 1.5 486 5028 2932 2257 3757
McommodaCyc 1.5 308 1812 1976 1447 2763
MdomesticaCyc 1.5 521 13070 3311 2597 4123
MguttatusCyc 1.5 492 5517 3121 2393 3820
MossCyc 6.5 404 4937 2821 2072 3224
MpusillaCyc 1.5 307 1774 1943 1464 2822
MtruncatulaCyc 1.5 541 7868 3334 2541 4110
Ntabacum_tn90Cyc 1.5 513 9084 3175 2570 4385
ObrachyanthaCyc 1.5 491 5295 2992 2310 3816
OglaberrimaCyc 1.5 487 5531 2987 2301 3787
OilseedrapeCyc 1.5 513 17724 3385 2573 4151
OlucimarinusCyc 1.5 284 1538 1790 1349 2689
OpunctataCyc 1.5 487 5246 2981 2299 3804
OrufipogonCyc 1.5 489 5509 3048 2346 3824
OryzaCyc 5.5 547 6311 3278 2625 4525
OthomaeumCyc 1.5 437 4604 2761 2120 3644
PapayaCyc 6.5 488 4339 3121 2354 3750
PineappleCyc 1.5 469 4761 2911 2207 3759
PoplarCyc 10.5 538 7988 3282 2498 4106
PotatoCyc 4.5 524 6390 3203 2625 4381
PpersicaCyc 1.5 512 5401 3136 2396 3970
RedcloverCyc 1.5 520 7515 3287 2525 3974
RedsageCyc 1.5 498 5046 3074 2355 3828
SelaginellaCyc 6.5 419 4819 2761 2103 3345
SetariaCyc 5.5 491 6289 3003 2290 3818
SoleraceaCyc 1.5 498 4146 3039 2409 4250
SorghumBicolorCyc 5.5 478 5961 2961 2294 3812
SoyCyc 8.5 601 10613 3496 2760 4797
SpirodelaCyc 3.5 450 3635 2719 2066 3596
SugarbeetCyc 1.5 507 4563 3127 2365 3944
SviridisCyc 1.5 494 6137 3013 2273 3814
SweetorangeCyc 1.5 516 5202 3154 2410 4045
SwitchgrassCyc 5.5 526 13998 3342 2580 3995
TomatoCyc 3.5 535 6267 3279 2677 4388
TparvulaCyc 1.5 490 4965 3162 2347 3727
VcarteriCyc 1.5 312 2189 2125 1559 2808
WheatACyc 3.5 502 6307 3114 2422 3889
WheatDCyc 3.5 492 6540 3072 2362 3790
ZmarinaCyc 1.5 431 3816 2635 1951 3435

PMN Release 12.0
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 12.0 1200 136453 6499 5503 10836
AhalleriCyc 1.0 490 4743 3232 2371 3716
AhypochondriacusCyc 1.0 483 4609 2945 2244 3869
AlyrataCyc 1.0 502 5504 3211 2384 3834
AmborellaCyc 1.0 490 4586 3128 2397 3890
AraCyc 15.0 610 5716 3557 2971 6117
BananaCyc 1.0 480 6589 2988 2298 3874
BarleyCyc 5.0 487 4660 2942 2339 4024
Boleracea_capitataCyc 1.0 483 6478 3100 2322 3765
Boleracea_oleraceaCyc 1.0 500 10526 3320 2462 3815
BrachypodiumCyc 5.0 495 5339 3033 2324 3839
Brapa_fpscCyc 1.0 500 7647 3211 2411 3836
BreadwheatCyc 1.0 540 22446 3470 2778 4379
BstrictaCyc 1.0 493 5081 3171 2350 3750
Carietinum_icc4958Cyc 1.0 520 5664 3349 2489 4050
CarrotCyc 1.0 496 6284 3062 2345 3882
CassavaCyc 7.0 513 6297 3178 2424 4037
CastorbeanCyc 1.0 534 6142 3761 2922 4215
CgrandifloraCyc 1.0 489 4750 3121 2309 3697
ChineseCabbageCyc 5.0 497 7869 3206 2375 3786
ChlamyCyc 7.0 379 2888 2471 1803 3666
ClementineCyc 1.0 509 5192 3140 2379 4008
CocoaCyc 1.0 509 5182 3192 2446 3982
CommonbeanCyc 1.0 515 5583 3144 2416 3997
CornCyc 8.0 556 7507 3259 2616 4718
CroseusCyc 1.0 543 15566 3431 2700 4289
CrubellaCyc 1.0 486 5033 3141 2328 3687
Csativa_pkCyc 1.0 502 5048 3138 2386 3905
CsubellipsoideaCyc 1.0 304 2054 2195 1640 2872
CucumberCyc 1.0 495 4383 2999 2333 4045
EgrandisCyc 1.0 519 7910 3185 2434 4031
EsalsugineumCyc 1.0 490 4959 3141 2323 3711
FlaxCyc 1.0 526 9107 3322 2579 4062
Fvesca_vescaCyc 1.0 499 5126 3069 2344 3878
GraimondiiCyc 1.0 506 7372 3185 2412 3966
GrapeCyc 7.0 511 5791 3191 2466 4006
KlaxifloraCyc 1.0 463 10325 3027 2313 3743
LjaponicusCyc 1.0 512 6968 3236 2501 4010
LperrieriCyc 1.0 486 5029 2932 2259 3757
McommodaCyc 1.0 308 1813 1976 1448 2763
MdomesticaCyc 1.0 521 13071 3311 2602 4123
MguttatusCyc 1.0 492 5518 3121 2396 3820
MossCyc 6.0 404 4938 2821 2074 3224
MpusillaCyc 1.0 307 1759 1943 1464 2822
MtruncatulaCyc 1.0 541 7869 3334 2546 4110
Ntabacum_tn90Cyc 1.0 513 9085 3175 2574 4385
ObrachyanthaCyc 1.0 491 5296 2992 2312 3816
OglaberrimaCyc 1.0 487 5532 2987 2304 3787
OilseedrapeCyc 1.0 513 17725 3385 2575 4151
OlucimarinusCyc 1.0 284 1539 1790 1352 2689
OpunctataCyc 1.0 487 5247 2981 2302 3804
OrufipogonCyc 1.0 489 5510 3048 2349 3824
OryzaCyc 5.0 547 6414 3278 2629 4525
OthomaeumCyc 1.0 437 4605 2761 2123 3644
PapayaCyc 6.0 488 4340 3121 2358 3750
PineappleCyc 1.0 469 4762 2911 2209 3759
PoplarCyc 10.0 538 7989 3282 2502 4106
PotatoCyc 4.0 524 6391 3203 2629 4381
PpersicaCyc 1.0 512 5402 3136 2400 3970
RedcloverCyc 1.0 520 7516 3287 2529 3974
RedsageCyc 1.0 498 5047 3074 2358 3828
SelaginellaCyc 6.0 419 4820 2761 2105 3345
SetariaCyc 5.0 491 6290 3003 2293 3818
SoleraceaCyc 1.0 498 4147 3039 2412 4250
SorghumBicolorCyc 5.0 478 5961 2961 2294 3812
SoyCyc 8.0 601 10819 3496 2764 4797
SpirodelaCyc 3.0 450 3636 2719 2069 3596
SugarbeetCyc 1.0 507 4548 3127 2364 3944
SviridisCyc 1.0 494 6138 3013 2276 3814
SweetorangeCyc 1.0 516 5203 3154 2412 4045
SwitchgrassCyc 5.0 526 13999 3342 2583 3995
TomatoCyc 3.0 535 6268 3279 2682 4388
TparvulaCyc 1.0 490 4966 3162 2348 3727
VcarteriCyc 1.0 312 2190 2125 1561 2808
WheatACyc 3.0 502 6308 3114 2425 3889
WheatDCyc 3.0 492 6541 3072 2365 3790
ZmarinaCyc 1.0 431 3817 2635 1952 3435

PMN Release 11.0
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 11.0 1213 140581 6051 5128 11114
AraCyc 14.0 619 5472 3482 2802 5485
BarleyCyc 4.0 540 4662 3033 2942 3637
BrachypodiumCyc 4.0 531 5319 3004 2285 3567
CassavaCyc 6.0 567 6371 3183 2386 3808
ChineseCabbageCyc 4.0 533 7825 3146 2331 3522
ChlamyCyc 6.0 373 2768 2435 1750 3221
CornCyc 7.0 545 6778 3151 2525 4256
GrapeCyc 6.0 557 5799 3182 2421 3784
MossCyc 5.0 473 4952 2801 2035 3135
OryzaCyc 4.0 543 6198 3223 2487 3906
PapayaCyc 5.0 538 4345 3111 2329 3552
PoplarCyc 9.0 599 7996 3305 2509 3936
PotatoCyc 3.0 558 5790 3122 2413 3706
SelaginellaCyc 5.0 481 4840 2811 2105 3261
SetariaCyc 4.0 549 6045 3028 2284 3635
SorghumBicolorCyc 4.0 540 5939 3017 2276 3676
SoyCyc 7.0 596 10607 3387 2636 4295
SpirodelaCyc 2.0 496 3638 2722 2045 3402
SwitchgrassCyc 4.0 587 14006 3379 2581 3885
TomatoCyc 2.0 588 6503 3288 2550 3880
WheatACyc 2.0 551 6315 3093 2395 3642
WheatDCyc 2.0 540 6552 3059 2335 3621

PMN Release 10.0
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 10.0 1214 152416 6200 5138 10960
AraCyc 13.0 620 5995 3635 2802 5242
BarleyCyc 3.0 541 5126 3033 2255 3392
BrachypodiumCyc 3.0 532 5845 3092 2289 3321
CassavaCyc 5.0 568 6957 3276 2391 3560
ChineseCabbageCyc 3.0 534 8564 3238 2337 3275
ChlamyCyc 5.0 374 3235 2597 1755 2963
CornCyc 6.0 546 7391 3296 2526 4000
GrapeCyc 5.0 558 6321 3270 2426 3527
MossCyc 4.0 474 5533 2896 2038 2883
OryzaCyc 3.0 544 6721 3373 2488 3647
PapayaCyc 4.0 539 4817 3200 2335 3304
PoplarCyc 8.0 600 8735 3395 2514 3691
PotatoCyc 2.0 559 6281 3211 2416 3456
SelaginellaCyc 4.0 482 5355 2899 2109 3007
SetariaCyc 3.0 550 6578 3114 2287 3389
SorghumBicolorCyc 3.0 541 6463 3105 2279 3420
SoyCyc 6.0 597 11619 3536 2636 4045
SpirodelaCyc 1.0 497 4052 2810 2048 3119
SwitchgrassCyc 3.0 588 15295 3471 2586 3641
TomatoCyc 1.0 589 7106 3379 2557 3634
WheatACyc 1.0 552 6868 3183 2400 3389
WheatDCyc 1.0 541 7152 3151 2349 3375

PMN Release 9.0 Update
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 9.5 1119 189957 5475 4539 9476
PapayaCyc 3.5 483 5717 2999 2143 3124

PMN Release 9.0
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 9.0 1119 189957 5475 4539 9476
AraCyc 12.0 634 10064 3646 2661 5054
BarleyCyc 2.0 472 7573 2955 2109 3012
BrachypodiumCyc 2.0 475 8804 2950 2108 2108
CassavaCyc 4.0 494 10010 3074 2205 3167
ChineseCabbageCyc 2.0 497 10980 3103 2218 3149
ChlamyCyc 4.0 380 3368 2442 1614 2898
CornCyc 5.0 536 14737 3088 2304 3710
GrapeCyc 4.0 485 7576 3043 2189 3170
MossCyc 3.0 428 7806 2791 1929 2764
OryzaCyc 2.0 521 11208 3103 2222 3258
PapayaCyc 3.0 483 5717 2999 2143 3124
PoplarCyc 7.0 505 20824 3124 2247 3238
SelaginellaCyc 3.0 435 6464 2802 1991 2852
SetariaCyc 2.0 481 10216 2977 2129 3061
SorghumBicolorCyc 2.0 482 9993 2986 2122 3077
SoyCyc 5.0 556 24119 3199 2263 3623
SwitchgrassCyc 2.0 494 24705 3093 2204 3158

PMN Release 8.0 Update
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 8.0 1050 188798 5332 4410 7634
AraCyc 11.5 597 9041 3490 2613 4798
BarleyCyc 1.0 465 7572 2901 2135 2880
BrachypodiumCyc 1.0 473 8802 2915 2128 2884
CassavaCyc 3.0 491 10007 3058 2232 2986
ChineseCabbageCyc 1.0 499 10976 3104 2270 2968
ChlamyCyc 3.5 349 3330 2263 1514 2708
CornCyc 4.0 508 14818 2958 2271 3436
GrapeCyc 3.0 479 7572 3015 2229 2909
MossCyc 2.0 416 7805 2713 1901 2507
OryzaCyc 1.0 482 15677 3000 2226 2987
PapayaCyc 2.0 481 5714 2999 2220 2873
PoplarCyc 6.0 505 20822 3124 2295 3115
SelaginellaCyc 2.0 421 6462 2737 1987 2630
SetariaCyc 1.0 477 10214 2942 2145 2888
SorghumBicolorCyc 1.0 480 8630 2939 2141 2928
SoyCyc 4.0 520 20317 3105 2273 3316
SwitchgrassCyc 1.0 479 17319 2985 2184 2767

PMN Release 8.0 Complete
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 8.0 1050 188798 5332 4410 7634
AraCyc 11.5 597 9041 3490 2613 4798
BarleyCyc 1.0 465 7572 2901 2135 2880
BrachypodiumCyc 1.0 473 8802 2915 2128 2884
CassavaCyc 3.0 491 10007 3058 2232 2986
ChineseCabbageCyc 1.0 499 10976 3104 2270 2968
ChlamyCyc 3.5 349 3330 2263 1514 2708
CornCyc 3.5 484 13979 2821 2160 3364
GrapeCyc 3.0 479 7572 3015 2229 2909
MossCyc 2.0 416 7805 2713 1901 2507
OryzaCyc 1.0 482 15677 3000 2226 2987
SwitchgrassCyc 1.0 479 17319 2985 2184 2767
PapayaCyc 2.0 481 5714 2999 2220 2873
PoplarCyc 6.0 505 20822 3124 2295 3115
SelaginellaCyc 2.0 421 6462 2737 1987 2630
SetariaCyc 1.0 477 10214 2942 2145 2888
SorghumBicolorCyc 1.0 480 8630 2939 2141 2928
SoyCyc 4.0 520 20317 3105 2273 3316

PMN Release 8.0 Initial
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 7.0 978 34663 3617 3455 7634
AraCyc 11.0 597 9993 3490 2613 4798
BarleyCyc 1.0 465 7572 2901 2135 2880
BrachypodiumCyc 1.0 473 8802 2915 2128 2884
CassavaCyc 3.0 491 10007 3058 2232 2986
ChlamyCyc 3.0 349 5163 2263 1514 2708
CornCyc 3.0 484 15410 2821 2160 3364
GrapeCyc 3.0 479 7572 3015 2229 2909
MossCyc 2.0 416 7805 2713 1901 2507
OryzaCyc 1.0 482 15677 3000 2226 2987
PapayaCyc 2.0 481 5714 2999 2220 2873
PoplarCyc 6.0 505 20822 3124 2295 3115
SelaginellaCyc 2.0 421 6462 2737 1987 2630
SetariaCyc 1.0 477 10214 2942 2145 2888
SorghumBicolorCyc 1.0 480 8630 2939 2141 2928
SoyCyc 4.0 520 20317 3105 2273 3316
SwitchgrassCyc 1.0 479 17319 2985 2184 2767

PMN Release 7.0
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 7.0 978 34663 3617 3455 7634
AraCyc 10.0 540 7127 3418 3323 4225
CassavaCyc 2.0 351 7178 2137 1538 1905
ChlamyCyc 2.0 283 2157 1688 1130 2036
CornCyc 2.0 373 10527 2198 1752 2344
GrapeCyc 2.0 359 5341 2143 1571 2037
MossCyc 1.0 335 5664 2018 1409 1869
PapayaCyc 1.0 370 3898 2165 1557 2036
PoplarCyc 5.0 381 8691 2256 1613 2099
SelaginellaCyc 1.0 329 3958 1986 1403 1838
SoyCyc 3.0 441 13055 2566 2007 2762

PMN Release 6.0
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 6.0 898 27652 3421 3334 6939
AraCyc 9.0 502 7100 3320 3320 3210
CassavaCyc 1.0 323 7178 2103 1815 1815
CornCyc 1.0 341 10519 2156 1731 2240
PoplarCyc 4.0 354 8691 2220 1596 2013
SoyCyc 2.0 412 13094 2528 1987 2673
GrapeCyc 1.0 330 5338 2101 1540 1933

PMN Release 5.0
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 5.0 810 11217 3167 3146 5734
AraCyc 8.0 446 5520 2689 2825 3346
PoplarCyc 3.0 343 3422 1906 1406 1371

PMN Release 4.0
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 4.0 762 11058 2929 2966 5204
AraCyc 7.0 423 5506 2418 2719 2907
PoplarCyc 2.0 323 3420 1707 1397 1092

PMN Release 3.0
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 3.0 714 10964 2709 2679 4803
AraCyc 6.0 408 5501 2323 2630 2691
PoplarCyc 1.0 321 3434 1668 1363 903

PMN Release 2.0
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 2.0 581 8558 2501 2464 4971
AraCyc 5.0 332 5869 1928 2312 2543

PMN Release 1.0 Inaugural
Database Pathways Enzymes Reactions Compounds Citations
PlantCyc 1.0 508 3389 2277 2314 4208
AraCyc 4.5 288 6214 1723 1956 2279

  

The PMN is funded by the National Science Foundation (Grant #: 1546838, 1026003 and 0640769) and the Department of Energy (BER Grant #:  ER65472), governed by an Editorial Board composed of internationally renowned scientists, and executed at the Carnegie Institution for Science, Department of Plant Biology.