PMN Release 15.5

Released:

December 2022

Release Information:

The data content of all 126 databases are described on our Content Statistics page while the data sources and methods for each database's contruction are listed on the Databases Overview page

Past releases are described in the Release Notes Archives and Databases Overview Archives

Parent

Overview

Update Of:

PMN Release 15.0

Overall Highlights:

We are pleased to announce the release of PMN 15.5! In PMN 15.5, twenty-five of our databases have been regenerated using new upstream genome releases. The updated databases are:

AhalleriCyc, BarleyCyc, BrachypodiumCyc, CacuminataCyc, CassavaCyc, ChineseCabbageCyc, ChlamyCyc, CornCyc, DrotundataCyc, EuropeanPearCyc, Fvesca_vescaCyc, GrapeCyc, LjaponicusCyc, MtruncatulaCyc, OilPalmCyc, PhalliiCyc, PoplarCyc, PotatoCyc, RchinensisCyc, SfallaxCyc, TeaCyc, TomatoCyc, ValleyOakCyc, WheatACyc, and ZmarinaCyc.

PMN 15.5 also updates our backend to Pathway Tools 26.0 and contains minor fixes to several databases (fixed broken links, etc.).

Databases

PlantCyc 15.2.0

AcoeruleaCyc 2.0.2

AhalleriCyc 4.0.0

AhypochondriacusCyc 3.0.2

AlyrataCyc 3.0.2

AmborellaCyc 3.0.2

AsparagusCyc 2.0.2

BananaCyc 3.0.2

Boleracea_CapitataCyc 3.0.2

Boleracea_OleraceaCyc 3.0.2

BrachypodiumCyc 8.0.0

Brapa_FpscCyc 3.0.2

BreadwheatCyc 3.0.2

BstrictaCyc 3.0.2

CacuminataCyc 3.0.0

CannuumCyc 2.0.2

Carietinum_Icc4958Cyc 3.0.2

CarnationCyc 2.0.2

CarrotCyc 3.0.2

CashewCyc 2.0.2

CassavaCyc 10.0.0

CastorbeanCyc 3.0.2

CcampestrisCyc 1.0.2

CcapsularisCyc 2.0.2

CgiganteaCyc 2.0.2

CgrandifloraCyc 3.0.2

ChinesecabbageCyc 8.0.0

ChlamyCyc 10.0.0

ClementineCyc 3.0.2

CommonbeanCyc 3.0.2

CorkoakCyc 1.0.2

CroseusCyc 3.0.2

CrubellaCyc 3.0.2

Csativa_PkCyc 3.0.2

CsubellipsoideaCyc 3.0.2

CucumberCyc 3.0.2

CvariabilisCyc 1.0.2

CzofingiensisCyc 2.0.2

DatepalmCyc 1.0.2

DrotundataCyc 3.0.0

EggplantCyc 2.0.2

EgrandisCyc 3.0.2

EsalsugineumCyc 3.0.2

EuropeanpearCyc 2.0.0

Fvesca_VescaCyc 4.0.0

GinkgoCyc 1.0.2

GraimondiiCyc 3.0.2

GrapeCyc 10.0.0

KfedtschenkoiCyc 2.0.2

KlaxifloraCyc 3.0.2

LettuceCyc 1.0.2

LjaponicusCyc 4.0.0

LperrieriCyc 3.0.2

MbalbisianaCyc 1.0.2

McommodaCyc 3.0.2

MdomesticaCyc 3.0.2

MguttatusCyc 3.0.2

MosobambooCyc 1.0.2

MpolymorphaCyc 2.0.2

MpusillaCyc 3.0.2

MsinensisCyc 2.1.1

MtruncatulaCyc 4.0.0

MuskmelonCyc 1.0.2

Ntabacum_Tn90Cyc 3.0.2

ObarthiiCyc 1.0.2

ObrachyanthaCyc 3.0.2

Oeuropaea_SylvestrisCyc 2.1.1

OglaberrimaCyc 3.0.2

OilpalmCyc 2.0.0

OilseedrapeCyc 3.0.2

OlongistaminataCyc 1.0.2

OlucimarinusCyc 3.0.2

OmeridionalisCyc 1.0.2

OnivaraCyc 1.0.2

OpunctataCyc 3.0.2

OrufipogonCyc 3.0.2

OthomaeumCyc 3.0.2

PapayaCyc 8.0.2

PaxillarisCyc 2.0.2

PhalliiCyc 3.0.0

PigeonpeaCyc 1.0.2

PineappleCyc 3.0.2

PoplarCyc 13.0.0

PotatoCyc 7.0.0

PpersicaCyc 3.0.2

QuinoaCyc 2.0.2

RchinensisCyc 3.0.0

RedcloverCyc 3.0.2

RedsageCyc 3.0.2

RmultifloraCyc 2.0.2

RubbertreeCyc 1.0.2

SacredlotusCyc 1.0.2

SelaginellaCyc 8.0.2

SetariaCyc 7.1.1

SfallaxCyc 3.0.0

SoleraceaCyc 3.0.2

SorghumbicolorCyc 7.1.1

SpennelliiCyc 2.0.2

SpiderflowerCyc 1.0.2

SpirodelaCyc 5.0.2

SugarbeetCyc 3.0.2

SunflowerCyc 2.0.2

SviridisCyc 3.1.1

SweetcherryCyc 1.0.2

SweetorangeCyc 3.0.2

SwitchgrassCyc 7.0.2

TomatoCyc 6.0.0

TparvulaCyc 3.0.2

ValleyoakCyc 2.0.0

VcarteriCyc 3.0.2

WatermelonCyc 1.0.2

WheataCyc 6.0.0

WheatdCyc 5.0.2

WildsugarcaneCyc 1.1.1

ZmarinaCyc 4.0.0

Statistics

Database	Pathways	Enzymes	Reactions	Compounds	Citations
PlantCyc 15.2.0	1164	4217	5392	4899	11042
AcoeruleaCyc 2.0.2	493	9985	3120	2327	3943
AhalleriCyc 4.0.0	476	9165	2995	2266	71
AhypochondriacusCyc 3.0.2	485	5496	2984	2216	3907
AlyrataCyc 3.0.2	484	7122	3057	2229	3725
AmborellaCyc 3.0.2	472	5324	3074	2290	3835
AraCyc 17.2.0	650	8759	3793	3029	7268
AsparagusCyc 2.0.2	462	5914	2974	2245	3777
BananaCyc 3.0.2	480	9952	3027	2266	3875
Boleracea_CapitataCyc 3.0.2	467	7598	2963	2176	3667
Boleracea_OleraceaCyc 3.0.2	481	12263	3136	2292	3709
BrachypodiumCyc 8.0.0	470	11923	2976	2306	66
Brapa_FpscCyc 3.0.2	481	9765	3047	2218	3731
BreadwheatCyc 3.0.2	496	30682	3271	2473	3994
BstrictaCyc 3.0.2	474	6506	3016	2202	3651
CacuminataCyc 3.0.0	474	6757	2913	2247	98
CannuumCyc 2.0.2	512	8164	3147	2419	4155
Carietinum_Icc4958Cyc 3.0.2	493	6633	3236	2363	3937
CarnationCyc 2.0.2	490	7514	3106	2340	3977
CarrotCyc 3.0.2	486	7185	3033	2252	3902
CashewCyc 2.0.2	496	18887	3150	2355	3976
CassavaCyc 10.0.0	486	13324	3001	2311	184
CastorbeanCyc 3.0.2	521	6895	3756	2835	4067
CcampestrisCyc 1.0.2	470	9592	2901	2155	3673
CcapsularisCyc 2.0.2	482	5217	2966	2175	3859
CgiganteaCyc 2.0.2	483	4760	2985	2227	3871
CgrandifloraCyc 3.0.2	471	6121	2983	2173	3626
ChinesecabbageCyc 8.0.0	471	20753	3040	2309	105
ChlamyCyc 10.0.0	385	6413	2556	1899	3264
ClementineCyc 3.0.2	488	8423	3042	2271	3911
CocoaCyc 3.0.2	498	8866	3164	2378	4031
CommonbeanCyc 3.0.2	501	8709	3089	2283	3968
CorkoakCyc 1.0.2	522	14428	3978	2999	4100
CornCyc 11.0.0	521	16392	3230	2558	4270
CroseusCyc 3.0.2	500	5483	3069	2299	4023
CrubellaCyc 3.0.2	472	6609	3015	2201	3647
Csativa_PkCyc 3.0.2	493	5872	3142	2327	3927
CsubellipsoideaCyc 3.0.2	312	312	2256	1647	2909
CucumberCyc 3.0.2	481	7317	2917	2154	3894
CvariabilisCyc 1.0.2	334	17511	2441	1756	2938
CzofingiensisCyc 2.0.2	332	2971	2567	1925	2920
DatepalmCyc 1.0.2	466	6043	2891	2162	3824
DrotundataCyc 3.0.0	489	13229	3089	2412	71
EggplantCyc 2.0.2	508	6949	3215	2372	4089
EgrandisCyc 3.0.2	506	11549	3136	2355	3983
EsalsugineumCyc 3.0.2	477	6877	3014	2194	3662
EuropeanpearCyc 2.0.0	483	8263	2962	2268	54
FlaxCyc 3.0.2	512	10592	3230	2430	4056
Fvesca_VescaCyc 4.0.0	489	13895	3002	2300	63
GinkgoCyc 1.0.2	453	7884	2958	2225	3674
GraimondiiCyc 3.0.2	490	18197	3141	2350	3881
GrapeCyc 10.0.0	502	9470	3100	2401	461
HopCyc 2.0.2	497	12074	3223	2429	3982
KfedtschenkoiCyc 2.0.2	482	10385	3061	2293	3833
KlaxifloraCyc 3.0.2	472	16279	3023	2259	3809
LerCyc 1.0.2	524	7073	3253	2992	8604
LettuceCyc 1.0.2	502	14374	3161	2354	3869
LjaponicusCyc 4.0.0	487	6684	2933	2278	175
LperrieriCyc 3.0.2	488	8210	3018	2258	3902
MbalbisianaCyc 1.0.2	475	7049	2877	2138	3832
McommodaCyc 3.0.2	310	2044	2171	1565	2798
MdomesticaCyc 3.0.2	508	10559	3179	2392	4068
MguttatusCyc 3.0.2	487	7771	3074	2338	3858
MosobambooCyc 1.0.2	484	12574	3108	2337	3865
MossCyc 8.0.2	415	17888	2868	2043	3350
MpolymorphaCyc 2.0.2	422	4841	2711	1990	3411
MpusillaCyc 3.0.2	301	1971	2085	1539	2775
MsinensisCyc 2.1.1	494	17547	3207	2393	3884
MtruncatulaCyc 4.0.0	520	8934	3133	2446	297
MuskmelonCyc 1.0.2	483	5571	2979	2183	3873
Ntabacum_Tn90Cyc 3.0.2	547	14177	3403	2601	4370
ObarthiiCyc 1.0.2	493	7994	3097	2314	3954
ObrachyanthaCyc 3.0.2	489	6227	3034	2281	3927
Oeuropaea_SylvestrisCyc 2.1.1	485	8643	3073	2305	3889
OglaberrimaCyc 3.0.2	494	6512	3042	2288	3921
OilpalmCyc 2.0.0	449	6350	2778	2143	64
OilseedrapeCyc 3.0.2	496	21070	3240	2400	4014
OlongistaminataCyc 1.0.2	498	7031	3089	2327	3957
OlucimarinusCyc 3.0.2	294	1701	1953	1425	2747
OmeridionalisCyc 1.0.2	475	8608	2966	2276	3922
OnivaraCyc 1.0.2	495	9055	3076	2293	3947
OpunctataCyc 3.0.2	484	8371	3022	2271	3907
OrufipogonCyc 3.0.2	496	8833	3118	2331	3961
OryzaCyc 7.2.1	606	8452	3846	2988	5212
OthomaeumCyc 3.0.2	460	5389	2868	2133	3775
PapayaCyc 8.0.2	485	5201	3114	2312	3825
PaxillarisCyc 2.0.2	505	8094	3217	2422	3971
PhalliiCyc 3.0.0	480	8632	2933	2238	63
PigeonpeaCyc 1.0.2	498	7345	3157	2345	3930
PineappleCyc 3.0.2	464	5698	2894	2148	3795
PoplarCyc 13.0.0	494	11838	3048	2340	557
PotatoCyc 7.0.0	527	11608	3211	2534	835
PpersicaCyc 3.0.2	499	10923	3053	2267	3965
QuinoaCyc 2.0.2	496	10629	3141	2357	3952
RchinensisCyc 3.0.0	495	9431	3095	2411	75
RedcloverCyc 3.0.2	507	8860	3209	2404	3977
RedsageCyc 3.0.2	495	7361	3178	2397	3892
RmultifloraCyc 2.0.2	512	13358	3279	2481	4030
RubbertreeCyc 1.0.2	516	9810	3334	2526	4055
SacredlotusCyc 1.0.2	471	8966	2961	2218	3776
SelaginellaCyc 8.0.2	422	6216	2799	2086	3436
SetariaCyc 7.1.1	489	9156	3053	2269	3876
SfallaxCyc 3.0.0	409	10195	2623	2009	62
SoleraceaCyc 3.0.2	490	5238	3016	2228	4032
SorghumbicolorCyc 7.1.1	492	9925	3064	2297	3887
SoyCyc 10.1.0	589	19067	3472	2698	5316
SpennelliiCyc 2.0.2	508	7450	3176	2355	4013
SpiderflowerCyc 1.0.2	472	9139	3017	2210	3643
SpirodelaCyc 5.0.2	455	4413	2748	2017	3653
StoraCyc 1.0.1	487	6587	2878	2200	1713
SugarbeetCyc 3.0.2	496	5718	3103	2307	3956
SunflowerCyc 2.0.2	497	11386	3134	2328	3904
SviridisCyc 3.1.1	485	10539	3072	2274	3846
SweetcherryCyc 1.0.2	501	6757	3130	2341	3985
SweetorangeCyc 3.0.2	493	11605	3144	2343	3963
SwitchgrassCyc 7.0.2	506	25703	3240	2424	3986
TeaCyc 2.0.0	487	10876	2988	2341	218
TomatoCyc 6.0.0	537	7582	3182	2595	1131
TparvulaCyc 3.0.2	475	5908	3050	2227	3674
ValleyoakCyc 2.0.0	483	9378	3063	2376	57
VcarteriCyc 3.0.2	321	2804	2272	1635	2788
WatermelonCyc 1.0.2	474	4917	2887	2149	3854
WheataCyc 6.0.0	474	11254	3028	2342	72
WheatdCyc 5.0.2	520	57062	3611	2703	4060
WildsugarcaneCyc 1.1.1	500	19681	3217	2422	3953
ZmarinaCyc 4.0.0	436	4635	2637	1994	56